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Ridom GmbH software ridom seqsphere
Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ridom+seqsphere/ridom+seqsphere/pm40662699-81-13-15
Average 90 stars, based on 1 article reviews
software ridom seqsphere - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Characterization of vanA -harboring plasmids supports differentiation of outbreak-related and sporadic vancomycin-resistant Enterococcus faecium isolates in a tertiary care hospital
Article Snippet: Minimum-spanning trees were created with Ridom SeqSphere + (Ridom GmbH) based on cgMLST [ ] allelic distances.

Article Title: Risk factors associated with long-term shedding infections of non-typhoidal Salmonella in humans.
Article Snippet: Laboratory data collection was performed using Microsoft Excel and Ridom SeqSphere+.

Article Title: Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens
Article Snippet: However, except for the WGSBAC pipeline and the Ridom SeqSphere+ pipeline for L. monocytogenes and E. coli , which provided a partitions table, the vast majority of them do not produce this type of output, but instead end up with outputs such as allele/SNP or distance matrices and phylogenetic trees (Table ).

Selection:

Article Title: Methicillin-resistant Staphylococcus aureus GG0398 on livestock farms and meat in the Netherlands.
Article Snippet: .. [11] A selection (n=427) of MRSA isolates from farms/animals (n=262; at least one isolate per positive farm), farmers (n=17), and meat (n=148) was sequenced using Illumina platforms and de novo assembled using SPAdes Page 6 of 23 aureus scheme comprising 2,567 genes was used (Ridom SeqSphere + ) to assess genetic relatedness among S. aureus isolates. ..

Sequencing:

Article Title: Outbreak of listeriosis associated with consumption of deli meats in a hospital, Germany, February to March 2023
Article Snippet: The Interactive Tree Of Life (https://itol. embl.de/) version 5 was used for the visualisation of the SNP-based phylogenetic tree. .. Publicly available sequencing data of L. monocytogenes MLST sequence type (ST)2 isolates were downloaded in June 2023 from the cgMLST.org server and imported in Ridom SeqSphere. ..

Article Title: Emergence of NDM-1- and OXA-23-Co-Producing Acinetobacter baumannii ST1 Isolates from a Burn Unit in Spain.
Article Snippet: .. Phylogenetic analysis was performed using Ridom SeqSphere+ (cgMLST), while sequence typing was performed using ARIBA (Pasteur and Oxford schemes). ..

Article Title: Detection, relatedness and environmental sources of emerging Legionella longbeachae infections in Finland, 1989-2024.
Article Snippet: WGS was performed on a MiSeq instrument (Illumina, San Diego, United States). .. All patient and corresponding environmental isolates were compared by WGS core genome multilocus sequence typing (cgMLST) using Ridom SeqSphere with Velvet assembler v. 1.1.04 and cgMLST tool v. 9.0.10 (Ridom GmbH, Münster, Germany) by In-house ad hoc pipeline, as instructed in the user guide, with 3113 targets using L. longbeachae NSW150; NC_013861.1 as seed. ..

Article Title: Klebsiella aerogenes ST117 causing folliculitis in men having sex with men, Belgium, February 2025
Article Snippet: The de novo assembly was performed using the Velvet algorithm (version 1.1.04) on Ridom SeqSphere + version 10.0.5 (Ridom GmbH, Münster, Germany). .. The K. aerogenes multilocus sequence type (MLST) was determined using Ridom SeqSphere. ..

Whole Complete genome sequencing:

Article Title: Detection, relatedness and environmental sources of emerging Legionella longbeachae infections in Finland, 1989-2024.
Article Snippet: WGS was performed on a MiSeq instrument (Illumina, San Diego, United States). .. All patient and corresponding environmental isolates were compared by WGS core genome multilocus sequence typing (cgMLST) using Ridom SeqSphere with Velvet assembler v. 1.1.04 and cgMLST tool v. 9.0.10 (Ridom GmbH, Münster, Germany) by In-house ad hoc pipeline, as instructed in the user guide, with 3113 targets using L. longbeachae NSW150; NC_013861.1 as seed. ..



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